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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1812
ChIP-seq
1311
total RNA-seq
440
ATAC-seq
269
single cell RNA-seq
208
DNase-seq
48
pCHi-C
36
snATAC-seq
28
WGBS
26
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
5
DNA accessibility
Date released
2
December, 2019
2
July, 2019
1
August, 2017
1
August, 2021
1
November, 2018
1
October, 2019
Available data
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
2
fastq
2
tsv
1
tar
Organism
7
Homo sapiens
Biosample type
7
tissue
1
primary cell
Organ
3
kidney
2
epithelium
2
pancreas
1
adipose tissue
1
blood vessel
1
brain
1
connective tissue
1
vasculature
1
vein
Project
8
AMP
Genome assembly (visualization)
5
hg19
Lab
8
AMP-T2D consortium
Audit category:
inconsistent ontology term
2
audit script error
award.project!
HPAP
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
8 results
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FAIRE-seq
RNA microarray
tissue
frontal cortex
1
islet of Langerhans
1
kidney
1
kidney interstitium
1
pancreas
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
1
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