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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1812
ChIP-seq
1311
total RNA-seq
434
ATAC-seq
269
single cell RNA-seq
208
DNase-seq
48
pCHi-C
36
snATAC-seq
28
WGBS
26
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
269
Transcription
Target of assay
3
control
Date released
106
August, 2021
47
September, 2023
43
April, 2018
42
July, 2018
9
April, 2020
6
February, 2021
3
August, 2018
3
July, 2019
3
May, 2023
2
June, 2018
1
December, 2019
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
196
tsv
93
bam
93
bigWig
87
fastq
13
txt
8
csv
Organism
269
Homo sapiens
Biosample type
174
tissue
95
primary cell
Organ
93
heart
69
epithelium
69
pancreas
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
213
AMP
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
93
GRCh38
93
hg19
Lab
202
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
inconsistent ontology term
7
audit script error
award.project!
HPAP
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
269 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 10 more…
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