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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
502
total RNA-seq
33
ATAC-seq
9
single cell RNA-seq
8
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
511
Transcription
33
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
542
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
192
June, 2019
162
July, 2018
118
February, 2023
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
2
June, 2018
1
August, 2022
1
October, 2022
Available data
528
bam
509
tsv
507
bigWig
23
bed narrowPeak
8
tagAlign
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
557
Homo sapiens
Biosample type
476
tissue
70
cell line
8
in vitro differentiated cells
3
primary cell
Organ
456
connective tissue
387
adipose tissue
66
artery
66
blood vessel
66
bone element
66
heart
66
vasculature
22
kidney
8
skeleton
6
limb
3
liver
Project
557
AMP
HPAP
Genome assembly (visualization)
536
GRCh38
531
hg19
Lab
543
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
5
audit script error
1
inconsistent replicate
award.project!
HPAP
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
557 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
382
bone tissue
58
kidney
11
8
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
4
primary cell
osteoblast
1
1
1
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