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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
22
ATAC-seq
8
ChIP-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
121
Transcription
22
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
354
August, 2017
333
May, 2020
315
August, 2021
309
May, 2021
290
October, 2019
191
June, 2019
162
July, 2018
156
February, 2021
117
February, 2023
117
May, 2019
94
July, 2019
90
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
66
May, 2022
53
October, 2018
49
April, 2018
47
September, 2023
46
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
22
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
January, 2018
5
March, 2019
5
March, 2023
3
August, 2018
2
June, 2018
1
August, 2022
1
October, 2022
Available data
142
bam
123
tsv
121
bigWig
23
bed narrowPeak
8
tagAlign
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
156
Homo sapiens
Biosample type
75
tissue
70
cell line
8
in vitro differentiated cells
3
primary cell
Organ
455
connective tissue
adipose tissue
66
artery
66
blood vessel
66
bone element
66
heart
66
vasculature
8
kidney
8
skeleton
6
limb
3
liver
Project
156
AMP
HPAP
Genome assembly (visualization)
144
hg19
138
GRCh38
Lab
156
AMP-T2D consortium
Audit category:
inconsistent ontology term
5
audit script error
1
inconsistent replicate
award.project!
HPAP
audit.ERROR.category!
inconsistent ontology term
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
156 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
bone tissue
58
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
4
primary cell
osteoblast
1
1
1
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