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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
single cell RNA-seq
28
snATAC-seq
17
pCHi-C
11
ATAC-seq
7
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
67
Transcription
39
DNA accessibility
Date released
47
September, 2023
23
February, 2023
19
April, 2020
17
May, 2021
16
January, 2021
4
March, 2023
2
March, 2020
Organism
123
Homo sapiens
Biosample type
95
tissue
24
primary cell
7
cell line
2
stem cell
Organ
47
kidney
28
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
HPAP
58
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
GRCh38
186
hg19
Lab
56
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
award.project!
HPAP
AMP
assembly!
GRCh38
BIOSAMPLE
ASSAY
128 results
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single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
47
islet of Langerhans
6
11
7
lung
9
10
pancreas
4
thymus
1
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples