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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
86
ChIP-seq
16
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
102
Transcription
86
DNA binding
8
DNA accessibility
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
5
March, 2023
3
March, 2020
Available data
184
bam
184
bigWig
98
tsv
86
bed narrowPeak
84
tagAlign
1
hic
Organism
214
Homo sapiens
Biosample type
205
primary cell
tissue
11
cell line
2
stem cell
Organ
8
blood
8
bodily fluid
4
epithelium
4
pancreas
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
HPAP
213
T1D
4
community
1
ITG
Genome assembly (visualization)
185
GRCh38
184
hg19
Lab
209
Kyle Gaulton, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
award.project!
HPAP
AMP
biosample_type!
tissue
BIOSAMPLE
ASSAY
218 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 32 more…
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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