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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
523
total RNA-seq
84
RNA microarray
18
ATAC-seq
8
ChIP-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
529
Transcription
18
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
644
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
113
February, 2023
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
5
March, 2019
5
March, 2023
4
January, 2018
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
550
bam
531
tsv
529
bigWig
89
txt
23
bed narrowPeak
8
tagAlign
6
csv
2
bed bed3
2
bed bed3+
Organism
644
Homo sapiens
Biosample type
545
tissue
96
cell line
in vitro differentiated cells
3
primary cell
Organ
447
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
26
epithelium
26
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
644
AMP
HPAP
Genome assembly (visualization)
548
hg19
546
GRCh38
Lab
644
AMP-T2D consortium
Audit category:
110
inconsistent ontology term
5
audit script error
1
inconsistent replicate
award.project!
HPAP
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
644 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
osteoblast
1
1
1
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