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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
total RNA-seq
112
ATAC-seq
102
single cell RNA-seq
53
ChIP-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
7
Hi-C
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
259
Transcription
122
DNA accessibility
53
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
35
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
79
May, 2021
48
July, 2018
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
13
October, 2019
12
February, 2023
8
January, 2021
8
June, 2019
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
2
February, 2021
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
609
bam
603
bigWig
bed narrowPeak
264
tsv
240
fastq
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
469
Homo sapiens
Biosample type
1793
tissue
469
primary cell
262
in vitro differentiated cells
258
cell line
8
stem cell
Organ
148
epithelium
126
pancreas
22
connective tissue
16
vasculature
14
blood vessel
14
kidney
10
brain
9
vein
8
blood
8
bodily fluid
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
348
AMP
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
337
hg19
265
GRCh38
Lab
343
AMP-T2D consortium
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
29
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
award.project!
HPAP
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
469 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
54
2
1
1
1
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
6
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
2
1
CD4-positive, alpha-beta memory T cell
22
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