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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
139
ATAC-seq
31
DNase-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
7
Hi-C
5
total RNA-seq
2
single cell RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
279
DNA binding
179
DNA accessibility
11
DNA methylation
7
3D chromatin structure
7
Transcription
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
102
May, 2020
59
August, 2017
55
June, 2019
47
September, 2018
32
October, 2019
13
July, 2019
9
November, 2017
8
January, 2021
5
May, 2019
5
September, 2017
4
August, 2021
2
February, 2021
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
609
bam
603
bigWig
295
bed narrowPeak
tsv
240
fastq
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
500
Homo sapiens
Biosample type
1661
tissue
543
cell line
500
primary cell
263
in vitro differentiated cells
6
stem cell
Organ
144
epithelium
92
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
391
AMP
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
373
hg19
274
GRCh38
Lab
356
AMP-T2D consortium
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
HPAP
files.file_type!
tsv
BIOSAMPLE
ASSAY
500 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
total RNA-seq
single cell RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
1
CD8-positive, alpha-beta T cell
33
2
1
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
pancreatic endocrine cell
23
CD4-positive, alpha-beta memory T cell
22
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