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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
505
ChIP-seq
161
DNase-seq
61
ATAC-seq
16
small RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
505
DNA binding
226
DNA accessibility
Target of assay
414
histone modification
413
histone
227
narrow histone mark
186
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
170
May, 2020
159
October, 2019
157
August, 2017
147
June, 2019
116
July, 2018
93
May, 2019
64
April, 2019
54
July, 2019
45
October, 2018
39
November, 2019
38
May, 2021
36
December, 2017
18
May, 2022
17
November, 2018
12
October, 2017
9
March, 2020
6
April, 2018
6
January, 2019
5
November, 2017
3
December, 2018
2
September, 2017
Available data
1648
bam
1647
bigWig
918
tsv
777
bed narrowPeak
493
bigBed narrowPeak
294
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1642
Homo sapiens
Biosample type
1648
tissue
574
primary cell
509
cell line
264
in vitro differentiated cells
3
stem cell
Organ
477
connective tissue
419
adipose tissue
397
pancreas
246
liver
138
brain
108
heart
96
limb
90
kidney
69
blood vessel
69
vasculature
66
bone element
42
musculature of body
31
nerve
27
artery
18
ureter
14
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1646
AMP
2
T1D
Genome assembly (visualization)
1703
GRCh38
1648
hg19
Lab
1630
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
HPAP
BIOSAMPLE
ASSAY
1648 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
islet of Langerhans
266
25
1
37
1
liver
147
83
2
1
bone tissue
58
body of pancreas
2
26
2
4
2
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