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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
955
total RNA-seq
274
ChIP-seq
178
DNase-seq
131
ATAC-seq
107
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
snATAC-seq
Assay category
1078
Transcription
315
DNA accessibility
274
DNA binding
38
DNA methylation
13
3D chromatin structure
Target of assay
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
166
May, 2020
163
June, 2019
160
August, 2017
120
July, 2018
99
August, 2021
77
February, 2023
77
July, 2019
74
October, 2019
44
October, 2018
43
December, 2017
40
November, 2019
38
March, 2020
38
May, 2021
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
12
November, 2017
10
October, 2017
7
December, 2018
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
January, 2019
1
May, 2023
Available data
1416
bam
1224
bigWig
1075
tsv
357
bed narrowPeak
277
fastq
249
bigBed narrowPeak
193
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
94
txt
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
Organism
1830
Homo sapiens
Biosample type
1832
tissue
580
cell line
401
primary cell
248
in vitro differentiated cells
6
stem cell
Organ
514
connective tissue
456
adipose tissue
369
pancreas
251
liver
213
heart
158
bone element
90
kidney
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1830
AMP
2
T1D
Genome assembly (visualization)
1282
GRCh38
1274
hg19
Lab
1832
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
award.project!
HPAP
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1832 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
snATAC-seq
tissue
adipose tissue
382
1
3
3
1
islet of Langerhans
286
20
1
34
4
1
1
1
1
liver
147
80
2
1
3
1
1
1
1
bone element
84
bone tissue
58
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