Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
722
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
722
DNA binding
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
168
October, 2019
147
August, 2017
93
May, 2019
70
November, 2017
66
April, 2019
45
October, 2018
40
May, 2024
36
December, 2017
27
May, 2020
12
October, 2017
7
November, 2018
6
January, 2019
3
December, 2018
2
March, 2020
Available data
615
bigWig
595
bed narrowPeak
555
bam
377
bigBed narrowPeak
186
tagAlign
153
fastq
35
bed broadPeak
25
bed bed3+
1
tagAlign bed3+
Organism
716
Homo sapiens
Biosample type
722
tissue
404
cell line
247
primary cell
161
in vitro differentiated cells
2
stem cell
Organ
184
brain
109
liver
107
heart
90
pancreas
57
blood vessel
57
vasculature
50
connective tissue
49
adipose tissue
49
limb
25
musculature of body
24
nerve
21
artery
21
kidney
12
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
720
AMP
2
T1D
Genome assembly (visualization)
587
GRCh38
526
hg19
Lab
682
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
HPAP
target.investigated_as!
control
BIOSAMPLE
ASSAY
722 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
liver
102
islet of Langerhans
58
left cardiac atrium
40
subcutaneous abdominal adipose tissue
31
heart left ventricle
29
+ See 103 more…
See all biosamples
Download