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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
419
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
1227
Transcription
470
DNA accessibility
419
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
broad histone mark
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
182
August, 2017
176
October, 2019
170
May, 2020
163
June, 2019
120
July, 2018
95
February, 2023
77
July, 2019
66
May, 2022
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
37
May, 2019
33
December, 2017
29
April, 2019
28
November, 2017
26
October, 2018
25
February, 2020
23
November, 2018
20
May, 2024
19
April, 2020
15
May, 2023
10
October, 2017
8
January, 2021
6
April, 2018
5
March, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
January, 2019
2
November, 2020
1
August, 2022
Available data
1519
bigWig
1518
bam
1076
tsv
731
bed narrowPeak
357
bigBed narrowPeak
265
fastq
196
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
157
txt
110
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2283
Homo sapiens
Biosample type
2287
tissue
607
primary cell
560
cell line
301
in vitro differentiated cells
8
stem cell
Organ
503
connective tissue
444
adipose tissue
435
pancreas
290
liver
283
kidney
240
heart
170
brain
158
bone element
81
blood vessel
81
vasculature
71
limb
62
musculature of body
56
eye
52
artery
20
lung
18
ureter
16
nerve
16
skeleton
15
epithelium
13
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2190
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1614
GRCh38
1554
hg19
Lab
1957
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
award.project!
HPAP
target.investigated_as!
control
broad histone mark
BIOSAMPLE
ASSAY
2287 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
298
44
68
1
7
4
3
1
1
2
adipose tissue
382
1
3
3
1
liver
167
80
20
2
1
3
1
1
1
1
kidney
49
11
75
13
64
6
1
1
1
bone element
84
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