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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
14
total RNA-seq
10
MeRIP-seq
6
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
DNA accessibility
20
DNA binding
14
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
14
histone
14
histone modification
11
control
8
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
20
August, 2017
10
November, 2020
6
February, 2023
4
August, 2021
4
July, 2018
4
March, 2020
2
July, 2019
2
November, 2019
1
February, 2020
1
March, 2019
1
May, 2021
1
October, 2019
Available data
bam
572
bigWig
409
tsv
351
fastq
140
bed narrowPeak
59
bigBed narrowPeak
22
bed bed3+
19
tagAlign
12
bed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
55
Homo sapiens
Biosample type
45
tissue
11
cell line
Organ
147
heart
127
kidney
89
bone element
89
liver
71
connective tissue
56
pancreas
46
adipose tissue
41
brain
37
musculature of body
26
eye
23
epithelium
16
vasculature
15
blood vessel
10
lung
8
limb
5
gonad
5
ovary
4
artery
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
HPAP
49
AMP
7
T1D
Genome assembly (visualization)
13
hg19
1
GRCh38
Lab
37
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
6
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
1
inconsistent assembly
award.project!
HPAP
files.file_type!
bam
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
20
12
4
3
1
pancreas
1
1
1
1
body of pancreas
1
cell line
EndoC_BH1
6
1
2
1
Panc1
1
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