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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
single cell RNA-seq
28
snATAC-seq
17
pCHi-C
11
ATAC-seq
7
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
67
Transcription
39
DNA accessibility
1
3D chromatin structure
Date released
47
September, 2023
23
February, 2023
19
April, 2020
17
May, 2021
16
January, 2021
5
March, 2023
2
March, 2020
Available data
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
1
hic
Organism
124
Homo sapiens
Biosample type
95
tissue
25
primary cell
7
cell line
2
stem cell
Organ
47
kidney
28
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
HPAP
58
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
1
GRCh38
Lab
56
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
1
inconsistent ontology term
award.project!
HPAP
AMP
files.file_type!
bam
BIOSAMPLE
ASSAY
129 results
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Clear Filters
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
47
islet of Langerhans
6
11
7
lung
9
10
pancreas
4
thymus
1
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
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cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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