Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
20
ChIP-seq
14
total RNA-seq
11
snATAC-seq
10
MeRIP-seq
6
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
49
DNA accessibility
20
DNA binding
14
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
14
histone
14
histone modification
11
control
8
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
20
August, 2017
19
February, 2023
17
May, 2021
10
November, 2020
8
January, 2021
8
March, 2020
4
August, 2021
4
July, 2018
4
March, 2019
4
October, 2019
2
July, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
October, 2017
Available data
bam
613
bigWig
411
tsv
402
fastq
214
bed narrowPeak
91
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
104
Homo sapiens
Biosample type
76
tissue
29
cell line
Organ
210
kidney
142
heart
110
liver
105
pancreas
93
bone element
91
connective tissue
55
epithelium
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
HPAP
77
AMP
28
T1D
Genome assembly (visualization)
20
hg19
4
GRCh38
Lab
61
AMP-T2D consortium
27
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
award.project!
HPAP
files.file_type!
bam
BIOSAMPLE
ASSAY
105 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
20
20
12
7
4
3
1
pancreas
1
4
1
1
1
body of pancreas
1
cell line
EndoC_BH1
18
6
1
2
1
Panc1
1
Download