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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ATAC-seq
20
ChIP-seq
14
total RNA-seq
11
snATAC-seq
5
Hi-C
4
MeRIP-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
31
DNA accessibility
20
DNA binding
14
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
8
control
6
narrow histone mark
2
nucleotide modification
Date released
20
August, 2017
19
February, 2023
8
January, 2021
6
March, 2020
4
July, 2018
4
March, 2019
4
November, 2020
4
October, 2019
2
August, 2021
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2021
1
November, 2019
1
October, 2017
Available data
bam
560
bigWig
397
fastq
372
tsv
200
bed narrowPeak
91
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
77
Homo sapiens
Biosample type
76
tissue
2
cell line
Organ
207
kidney
181
heart
110
liver
85
connective tissue
78
pancreas
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
42
brain
39
artery
39
musculature of body
27
epithelium
20
lung
9
blood
9
bodily fluid
9
bone element
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
Project
HPAP
50
AMP
28
T1D
Genome assembly (visualization)
17
hg19
4
GRCh38
Lab
40
AMP-T2D consortium
27
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
award.project!
HPAP
files.file_type!
bam
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
78 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
Hi-C
MeRIP-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
20
20
12
7
3
4
1
pancreas
1
4
1
1
1
body of pancreas
1
cell line
EndoC_BH1
1
Panc1
1
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