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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
total RNA-seq
29
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
1
ATAC-seq
Assay category
67
Transcription
29
DNA binding
27
DNA methylation
8
3D chromatin structure
1
DNA accessibility
Target of assay
32
control
Date released
647
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
213
August, 2021
168
July, 2018
125
October, 2019
101
July, 2019
93
November, 2017
64
February, 2023
61
March, 2020
49
April, 2018
47
September, 2023
31
October, 2018
28
May, 2022
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
158
bam
132
bigWig
67
tsv
60
fastq
bed narrowPeak
47
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
132
Homo sapiens
Biosample type
99
tissue
33
primary cell
Organ
36
connective tissue
30
adipose tissue
21
heart
19
pancreas
17
brain
15
epithelium
10
kidney
10
liver
10
musculature of body
10
vasculature
9
blood vessel
5
limb
2
artery
2
pericardium
1
eye
Project
132
AMP
Genome assembly (visualization)
86
hg19
76
GRCh38
Lab
132
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
award.project!
HPAP
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
132 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
ATAC-seq
tissue
subcutaneous adipose tissue
4
10
1
omental fat pad
4
8
1
body of pancreas
2
8
2
heart left ventricle
2
1
4
right lobe of liver
2
2
1
+ See 26 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic acinar cell
2
+ See 21 more…
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