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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
727
total RNA-seq
173
ChIP-seq
84
RNA microarray
56
ATAC-seq
19
pCHi-C
6
single cell RNA-seq
3
snDrop-seq
1
DNAme array
Assay category
733
Transcription
173
DNA binding
56
DNA accessibility
1
DNA methylation
Target of assay
140
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
21
transcription factor
12
control
5
RNA binding protein
Date released
670
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
168
July, 2018
129
February, 2023
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
64
March, 2020
61
November, 2019
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
854
bigWig
849
bam
726
tsv
156
bed narrowPeak
98
tagAlign
89
txt
6
csv
4
bed bed3+
4
bed bedgraph
2
bed bed3
Organism
1069
Homo sapiens
Biosample type
585
tissue
209
primary cell
158
in vitro differentiated cells
117
cell line
Organ
457
connective tissue
386
adipose tissue
151
bone element
87
pancreas
69
heart
66
artery
66
blood vessel
66
vasculature
52
epithelium
8
kidney
8
skeleton
6
limb
3
liver
2
embryo
1
bone marrow
1
thymus
Project
916
AMP
153
T1D
HPAP
Genome assembly (visualization)
890
hg19
844
GRCh38
Lab
834
AMP-T2D consortium
235
Kyle Gaulton, UCSD
Audit category:
218
inconsistent ontology term
5
audit script error
1
inconsistent replicate
award.project!
HPAP
BIOSAMPLE
ASSAY
1069 results
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Clear Filters
total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
pCHi-C
single cell RNA-seq
snDrop-seq
DNAme array
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
36
kidney
5
+ See 18 more…
primary cell
monocyte
52
85
13
1
1
CD8-positive, alpha-beta T cell
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
osteoblast
1
1
1
CD4-positive, alpha-beta T cell
2
+ See 12 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
cardiac precursors (cardiac muscle cell)
18
induced pluripotent stem cell
9
adipocyte
4
4
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
30
1
16
HepG2
1
1
iPSC derived cell line
2
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