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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
967
total RNA-seq
457
ATAC-seq
274
single cell RNA-seq
203
DNase-seq
86
RNA microarray
52
pCHi-C
36
snATAC-seq
30
Hi-C
22
WGBS
20
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
20
DNA methylation
Date released
14
July, 2019
6
August, 2017
Available data
18
bed bedMethyl
18
bigBed bedMethyl
4
fastq
Organism
20
Homo sapiens
Biosample type
11
tissue
9
primary cell
Organ
6
epithelium
5
musculature of body
4
kidney
2
brain
2
heart
2
liver
2
pancreas
connective tissue
1
eye
1
pericardium
1
vasculature
Project
20
AMP
Genome assembly (visualization)
18
hg19
Lab
20
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
award.project!
HPAP
organ_slims!
connective tissue
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
20 results
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RRBS
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
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