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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
833
ChIP-seq
582
total RNA-seq
254
ATAC-seq
DNase-seq
174
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
833
DNA binding
770
Transcription
286
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
595
histone modification
594
histone
311
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
236
October, 2019
228
August, 2021
225
August, 2017
193
May, 2020
120
July, 2018
115
May, 2019
101
February, 2021
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
23
February, 2020
22
October, 2017
19
April, 2020
17
November, 2018
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1234
bam
1116
bigWig
796
bed narrowPeak
619
tsv
376
bigBed narrowPeak
325
fastq
230
tagAlign
157
txt
64
xls
36
bed broadPeak
25
bed bed3+
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2046
Homo sapiens
Biosample type
2054
tissue
700
primary cell
660
cell line
297
in vitro differentiated cells
9
stem cell
Organ
connective tissue
498
pancreas
486
adipose tissue
357
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1957
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1204
GRCh38
1114
hg19
Lab
1702
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
HPAP
organ_slims!
connective tissue
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
2054 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
70
298
68
7
4
3
1
1
4
liver
145
167
20
1
1
3
1
1
1
kidney
27
49
75
64
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
1
4
1
1
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