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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
582
total RNA-seq
550
ChIP-seq
254
ATAC-seq
176
DNase-seq
174
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
770
Transcription
550
DNA binding
462
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
595
histone modification
594
histone
311
narrow histone mark
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
201
October, 2019
193
May, 2020
174
August, 2017
162
June, 2019
120
July, 2018
101
February, 2021
94
February, 2023
67
July, 2019
66
May, 2022
59
May, 2019
47
September, 2023
45
December, 2017
43
April, 2019
40
May, 2021
40
November, 2017
39
March, 2020
39
November, 2019
32
October, 2018
25
November, 2018
23
February, 2020
20
May, 2024
19
April, 2020
14
May, 2023
12
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
1
August, 2022
1
January, 2018
Available data
1187
bam
1038
bigWig
718
bed narrowPeak
619
tsv
347
bigBed narrowPeak
289
fastq
193
bed bed3+
190
bed broadPeak
174
bigBed broadPeak
158
tagAlign
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1943
Homo sapiens
Biosample type
1947
tissue
643
cell line
607
primary cell
261
in vitro differentiated cells
8
stem cell
Organ
connective tissue
468
adipose tissue
464
pancreas
336
liver
289
kidney
256
heart
195
brain
158
bone element
97
blood vessel
97
vasculature
88
limb
66
musculature of body
59
artery
56
eye
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1850
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1137
GRCh38
1075
hg19
Lab
1615
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
10
missing controlled_by
Audit category:
3
inconsistent control read length
award.project!
HPAP
organ_slims!
connective tissue
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
1947 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
56
68
1
7
4
3
1
1
4
liver
167
123
20
2
1
1
3
1
1
1
kidney
49
17
75
13
64
6
1
1
1
bone element
84
heart left ventricle
3
20
2
3
18
1
4
1
1
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