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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
155
total RNA-seq
151
ATAC-seq
102
single cell RNA-seq
30
DNase-seq
17
pCHi-C
9
RRBS
8
snATAC-seq
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
276
DNA binding
259
Transcription
190
DNA accessibility
10
DNA methylation
7
3D chromatin structure
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
34
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
73
September, 2018
59
August, 2017
51
June, 2019
48
July, 2018
43
April, 2018
34
October, 2019
30
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
605
bam
600
bigWig
292
bed narrowPeak
264
tsv
240
fastq
106
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
759
Homo sapiens
Biosample type
2681
tissue
759
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
254
epithelium
194
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
554
AMP
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
621
hg19
523
GRCh38
Lab
519
AMP-T2D consortium
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
HPAP
organ_slims!
eye
BIOSAMPLE
ASSAY
759 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic beta cell
13
10
7
12
pancreatic alpha cell
13
10
6
12
CD8-positive, alpha-beta T cell
33
4
2
1
pancreatic ductal cell
13
4
4
10
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