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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ChIP-seq
131
total RNA-seq
69
single cell RNA-seq
46
ATAC-seq
4
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
200
Transcription
147
DNA binding
51
DNA accessibility
4
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
168
August, 2017
72
September, 2018
39
July, 2018
37
October, 2018
34
April, 2018
24
May, 2022
11
September, 2017
7
November, 2018
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
689
bam
613
bigWig
411
tsv
402
fastq
214
bed narrowPeak
91
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
395
Homo sapiens
Biosample type
213
tissue
189
primary cell
Organ
465
liver
402
pancreas
188
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
402
AMP
HPAP
Genome assembly (visualization)
363
hg19
347
GRCh38
Lab
376
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
award.project!
HPAP
BIOSAMPLE
ASSAY
402 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
28
103
20
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
primary cell
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic ductal cell
13
4
9
4
pancreatic acinar cell
8
4
9
5
pancreatic endocrine cell
23
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