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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
49
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
49
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
51
August, 2017
12
July, 2019
5
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bigWig
423
bam
401
tsv
25
fastq
13
bed narrowPeak
10
bigBed narrowPeak
7
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
bigBed broadPeak
1
bedpe bed3+
Organism
464
Homo sapiens
Biosample type
462
tissue
2
primary cell
1
in vitro differentiated cells
Organ
734
pancreas
640
connective tissue
620
liver
465
adipose tissue
343
heart
320
epithelium
264
kidney
217
brain
197
vasculature
196
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
57
musculature of body
56
eye
30
embryo
30
nerve
20
lung
16
skeleton
16
spleen
16
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
465
AMP
Genome assembly (visualization)
424
hg19
422
GRCh38
Lab
465
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
award.project!
HPAP
target.investigated_as!
control
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
465 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
31
3
subcutaneous adipose tissue
7
2
1
1
1
white adipose tissue
12
omental fat pad
5
3
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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