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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
total RNA-seq
23
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
106
Transcription
82
DNA accessibility
23
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
318
November, 2017
225
August, 2021
199
June, 2019
125
February, 2021
124
May, 2020
123
August, 2017
112
February, 2023
88
November, 2018
88
October, 2019
77
May, 2021
64
July, 2019
63
December, 2017
48
July, 2018
47
September, 2023
46
March, 2020
44
October, 2018
43
April, 2018
40
May, 2022
35
December, 2018
31
November, 2019
28
May, 2019
20
April, 2019
19
April, 2020
18
January, 2019
16
January, 2021
15
September, 2018
14
May, 2023
12
November, 2020
11
October, 2017
11
September, 2017
8
February, 2018
8
January, 2018
5
December, 2019
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
98
tsv
87
bed narrowPeak
64
xls
18
bam
13
bigWig
8
tagAlign
8
txt
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
224
Homo sapiens
Biosample type
179
tissue
24
cell line
21
in vitro differentiated cells
1
primary cell
Organ
92
heart
81
kidney
20
liver
6
blood vessel
6
vasculature
5
connective tissue
3
epithelium
3
pancreas
2
artery
1
adipose tissue
Project
225
AMP
Genome assembly (visualization)
74
GRCh38
27
hg19
Lab
119
AMP-T2D consortium
79
Katalin Susztak, Upenn
23
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
award.project!
HPAP
target.investigated_as!
histone modification
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
225 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
15
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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