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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
132
single cell RNA-seq
66
snATAC-seq
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
333
Transcription
DNA binding
66
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
95
May, 2022
88
February, 2023
68
May, 2021
56
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
16
January, 2021
5
March, 2023
4
March, 2020
3
October, 2022
Available data
159
fastq
114
zippedFastqFolder
104
tsv
98
bam
98
bigWig
4
hic
3
bedpe bed3+
3
cool
Organism
468
Homo sapiens
Biosample type
396
primary cell
65
tissue
9
cell line
2
stem cell
Organ
122
pancreas
105
epithelium
47
kidney
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
275
HPAP
145
T1D
47
KPMP
LungMap
4
community
1
ITG
Genome assembly (visualization)
101
hg19
99
GRCh38
Lab
275
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
47
KPMP
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
7
inconsistent ontology term
award.project!
LungMap
AMP
assay_slims!
DNA binding
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
472 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
1
monocyte
53
1
exocrine cell
39
pancreatic beta cell
11
16
1
+ See 37 more…
tissue
kidney
47
islet of Langerhans
7
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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