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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
Assay category
198
DNA binding
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
67
August, 2017
43
December, 2017
43
May, 2021
24
February, 2018
23
August, 2021
6
March, 2020
4
January, 2018
2
October, 2019
1
August, 2018
Available data
146
bam
125
fastq
119
bigWig
110
bed narrowPeak
40
tagAlign
21
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
2
tsv
Organism
213
Homo sapiens
Biosample type
1080
tissue
516
cell line
364
primary cell
213
in vitro differentiated cells
8
stem cell
Organ
70
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
213
AMP
Genome assembly (visualization)
127
hg19
120
GRCh38
4
hg18
Lab
174
AMP-T2D consortium
37
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
14
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
award.project!
LungMap
assay_slims!
Transcription
DNA accessibility
BIOSAMPLE
ASSAY
213 results
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ChIP-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
in vitro differentiated cells
adipocyte
67
1
embryonic stem cell
40
1
neural progenitor cell
21
pancreatic endoderm
18
1
hepatocyte
15
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