Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
229
ChIP-seq
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
229
DNA binding
15
DNA methylation
10
DNA accessibility
Target of assay
162
histone modification
161
histone
89
broad histone mark
72
narrow histone mark
42
control
25
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
406
November, 2017
278
October, 2019
254
August, 2017
218
June, 2019
210
August, 2021
174
May, 2022
169
May, 2021
166
February, 2021
151
May, 2020
120
May, 2019
100
February, 2023
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
51
December, 2017
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
March, 2020
43
September, 2020
40
May, 2024
36
November, 2019
35
December, 2018
25
January, 2019
23
October, 2017
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
December, 2019
3
June, 2018
1
August, 2022
Available data
144
fastq
139
bam
135
bigWig
99
bed narrowPeak
71
tagAlign
41
bigBed narrowPeak
40
bed broadPeak
26
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
247
Homo sapiens
Biosample type
195
tissue
in vitro differentiated cells
59
primary cell
Organ
99
pancreas
57
adipose tissue
57
connective tissue
54
liver
29
epithelium
26
musculature of body
Project
254
AMP
Genome assembly (visualization)
138
hg19
111
GRCh38
Lab
254
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
award.project!
LungMap
assay_title!
total RNA-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
254 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
48
3
1
islet of Langerhans
42
1
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 4 more…
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
See all biosamples
Download