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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
217
ATAC-seq
165
single cell RNA-seq
total RNA-seq
87
RNA microarray
25
pCHi-C
18
snATAC-seq
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
292
DNA binding
236
DNA accessibility
165
Transcription
22
DNA methylation
16
3D chromatin structure
Target of assay
187
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
179
August, 2021
106
August, 2017
101
February, 2021
82
February, 2023
68
October, 2019
47
September, 2023
29
October, 2018
27
March, 2020
25
November, 2017
23
May, 2020
22
May, 2019
21
November, 2019
20
May, 2022
15
April, 2019
14
July, 2019
14
May, 2023
12
December, 2017
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
3
November, 2018
1
August, 2022
1
January, 2019
1
May, 2021
Available data
1000
bam
984
bed narrowPeak
bigWig
561
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
145
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
848
Homo sapiens
Biosample type
850
tissue
380
primary cell
131
cell line
126
in vitro differentiated cells
7
stem cell
Organ
159
kidney
153
heart
112
pancreas
96
bone element
75
liver
63
connective tissue
62
adipose tissue
60
blood vessel
60
vasculature
51
brain
44
artery
34
eye
28
limb
23
musculature of body
13
epithelium
12
skeleton
11
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
781
AMP
47
KPMP
22
T1D
LungMap
Genome assembly (visualization)
146
GRCh38
107
hg19
Lab
660
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
award.project!
LungMap
assay_title!
total RNA-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
850 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
64
6
1
1
islet of Langerhans
42
65
4
7
3
1
4
bone element
84
liver
63
1
1
1
1
3
subcutaneous abdominal adipose tissue
35
3
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