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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
66
ATAC-seq
total RNA-seq
19
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
106
Transcription
72
DNA accessibility
19
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
211
August, 2021
156
May, 2022
143
February, 2021
129
August, 2017
113
May, 2021
112
February, 2023
56
May, 2020
50
October, 2019
47
September, 2023
46
March, 2020
43
September, 2020
40
May, 2024
26
July, 2019
16
January, 2021
14
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
106
bed narrowPeak
98
tsv
64
xls
bam
32
bigWig
24
tagAlign
8
txt
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
210
Homo sapiens
Biosample type
179
tissue
27
cell line
5
in vitro differentiated cells
Organ
92
heart
81
kidney
22
liver
6
blood vessel
6
vasculature
5
connective tissue
3
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
211
AMP
Genome assembly (visualization)
64
GRCh38
20
hg19
Lab
102
AMP-T2D consortium
79
Katalin Susztak, Upenn
26
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
award.project!
LungMap
assay_title!
total RNA-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
211 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
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