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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
22
DNA binding
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
7
October, 2017
5
July, 2019
3
October, 2019
2
March, 2020
1
February, 2023
Available data
bam
217
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
9
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
31
Homo sapiens
Biosample type
27
tissue
4
primary cell
Organ
190
pancreas
179
heart
161
kidney
152
epithelium
89
bone element
84
connective tissue
80
liver
48
vasculature
47
blood vessel
46
adipose tissue
37
artery
37
musculature of body
35
eye
31
brain
9
blood
9
bodily fluid
5
gonad
5
limb
5
ovary
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
9
hg19
2
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
missing controlled_by
award.project!
LungMap
assay_title!
total RNA-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
31 results
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Clear Filters
ChIP-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
brain
7
1
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
Ammon's horn
1
+ See 6 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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