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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
50
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
50
DNA binding
8
DNA accessibility
6
DNA methylation
3
Transcription
Target of assay
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
Date released
57
August, 2017
October, 2018
3
July, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
25
bigWig
24
bam
21
fastq
8
bed narrowPeak
8
tagAlign
6
bed bed3+
5
bigBed narrowPeak
4
tsv
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
69
Homo sapiens
Biosample type
68
tissue
1
in vitro differentiated cells
1
primary cell
Organ
602
liver
492
pancreas
393
epithelium
321
heart
294
kidney
269
brain
187
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
90
musculature of body
85
artery
70
adipose tissue
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
25
hg19
23
GRCh38
Lab
70
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
award.project!
LungMap
assay_title!
total RNA-seq
month_released!
October, 2018
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
adipose tissue
2
3
3
1
omental fat pad
1
1
2
subcutaneous adipose tissue
1
1
1
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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