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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
total RNA-seq
2
RRBS
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
6
3D chromatin structure
3
Transcription
2
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
24
August, 2017
7
May, 2019
6
July, 2019
3
March, 2020
2
May, 2022
1
January, 2018
Available data
64
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
86
Homo sapiens
Biosample type
74
tissue
12
primary cell
Organ
599
liver
537
pancreas
387
epithelium
313
heart
290
kidney
267
brain
207
connective tissue
173
vasculature
168
blood vessel
114
limb
97
bone element
91
adipose tissue
86
musculature of body
85
artery
69
blood
69
bodily fluid
41
eye
38
nerve
23
embryo
23
spleen
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
66
hg19
48
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
award.project!
LungMap
assay_title!
total RNA-seq
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
2
1
1
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
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