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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
132
single cell RNA-seq
66
snATAC-seq
60
ATAC-seq
47
WGBS
44
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
333
Transcription
126
DNA accessibility
47
DNA methylation
44
DNA binding
Target of assay
88
histone
88
histone modification
44
broad histone mark
narrow histone mark
Date released
134
May, 2022
112
May, 2021
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
16
January, 2021
7
August, 2020
4
March, 2020
4
March, 2023
Available data
169
fastq
153
zippedFastqFolder
152
bigWig
142
bam
104
tsv
44
bed narrowPeak
44
tagAlign
hic
3
bedpe bed3+
3
cool
Organism
568
Homo sapiens
Biosample type
485
primary cell
76
tissue
9
cell line
2
stem cell
Organ
179
pancreas
151
epithelium
47
kidney
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
321
HPAP
200
T1D
47
KPMP
LungMap
4
community
Genome assembly (visualization)
152
GRCh38
142
hg19
Lab
321
Klaus Kaestner, Upenn
196
Kyle Gaulton, UCSD
47
KPMP
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
7
inconsistent ontology term
award.project!
LungMap
AMP
files.file_type!
hic
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
572 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
monocyte
53
44
1
pancreatic beta cell
11
16
16
exocrine cell
39
+ See 36 more…
tissue
kidney
47
islet of Langerhans
7
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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