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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
8
ATAC-seq
5
total RNA-seq
2
single cell RNA-seq
Assay category
15
DNA binding
8
DNA accessibility
7
Transcription
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
707
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
205
February, 2023
200
May, 2022
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
20
bam
19
bigWig
17
fastq
14
tagAlign
12
bed narrowPeak
7
tsv
6
bigBed narrowPeak
4
bed broadPeak
Organism
30
Homo sapiens
Biosample type
23
tissue
5
primary cell
2
in vitro differentiated cells
Organ
16
brain
6
epithelium
5
liver
5
pancreas
kidney
1
adipose tissue
1
connective tissue
1
spleen
Project
30
AMP
Genome assembly (visualization)
19
GRCh38
18
hg19
Lab
29
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
Audit category:
4
missing controlled_by
award.project!
LungMap
organ_slims!
kidney
BIOSAMPLE
ASSAY
30 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
tissue
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
omental fat pad
1
+ See 1 more…
primary cell
hepatocyte
5
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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