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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
549
total RNA-seq
84
RNA microarray
28
ATAC-seq
27
snATAC-seq
18
single cell RNA-seq
14
ChIP-seq
10
MeRIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
1
DNase-seq
Assay category
567
Transcription
56
DNA accessibility
14
DNA binding
6
DNA methylation
Target of assay
14
control
5
nucleotide modification
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
589
bam
563
tsv
561
bigWig
89
txt
56
fastq
30
bed narrowPeak
8
tagAlign
6
bigBed narrowPeak
6
csv
5
bed bed3+
4
bed bedgraph
2
bed bed3
1
bed broadPeak
1
bigBed broadPeak
Organism
742
Homo sapiens
Biosample type
555
tissue
102
cell line
59
primary cell
26
in vitro differentiated cells
Organ
461
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
53
pancreas
43
epithelium
8
kidney
8
skeleton
6
limb
3
liver
Project
697
AMP
45
HPAP
Genome assembly (visualization)
587
hg19
581
GRCh38
Lab
687
AMP-T2D consortium
45
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
134
inconsistent ontology term
32
audit script error
1
inconsistent replicate
award.project!
LungMap
BIOSAMPLE
ASSAY
742 results
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total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
ChIP-seq
MeRIP-seq
WGBS
snDrop-seq
pCHi-C
DNase-seq
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
6
4
kidney
5
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cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
5
2
1
1
pancreatic alpha cell
2
6
pancreatic beta cell
2
pancreatic acinar cell
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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