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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
Assay category
121
DNA binding
Target of assay
66
control
55
histone
55
histone modification
33
broad histone mark
22
narrow histone mark
Date released
48
August, 2017
23
May, 2020
23
November, 2017
9
October, 2019
8
August, 2021
8
October, 2017
1
February, 2021
1
May, 2021
Available data
3290
bam
3084
bigWig
bed narrowPeak
1542
tsv
1358
fastq
1017
bigBed narrowPeak
392
tagAlign
318
bed broadPeak
281
bigBed broadPeak
269
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
120
Homo sapiens
Biosample type
93
tissue
22
in vitro differentiated cells
4
cell line
2
primary cell
Organ
47
liver
35
brain
21
connective tissue
7
adipose tissue
5
pancreas
artery
2
blood vessel
2
epithelium
2
heart
2
musculature of body
2
vasculature
Project
121
AMP
Genome assembly (visualization)
4
hg19
Lab
121
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
award.project!
LungMap
organ_slims!
artery
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
121 results
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Clear Filters
ChIP-seq
tissue
liver
43
brain
8
cingulate gyrus
7
subcutaneous abdominal adipose tissue
7
layer of hippocampus
4
+ See 15 more…
in vitro differentiated cells
adipocyte
14
neural progenitor cell
7
pancreatic PP cell
1
cell line
HepG2
3
iPSC derived cell line
1
primary cell
hepatocyte
1
skeletal muscle myoblast
1
See all biosamples
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