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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
14
total RNA-seq
2
ATAC-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
WGBS
1
whole genome sequencing assay
Assay category
438
DNA binding
14
Transcription
2
3D chromatin structure
2
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
348
transcription factor
82
recombinant protein
66
control
64
RNA binding protein
30
chromatin remodeller
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
61
November, 2018
31
August, 2021
28
December, 2018
23
January, 2019
2
February, 2021
1
January, 2018
1
May, 2020
Available data
427
fastq
426
bam
387
bigWig
362
bed narrowPeak
347
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
462
Homo sapiens
Biosample type
462
cell line
361
tissue
22
primary cell
15
in vitro differentiated cells
Organ
401
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
462
AMP
Genome assembly (visualization)
385
hg19
322
GRCh38
Lab
431
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
award.project!
LungMap
BIOSAMPLE
ASSAY
462 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
STARR-seq
pCHi-C
WGBS
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
1
GM12878
60
1
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