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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
195
ChIP-seq
187
single cell RNA-seq
151
total RNA-seq
48
snATAC-seq
31
DNase-seq
10
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
340
Transcription
280
DNA accessibility
195
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
54
May, 2021
48
July, 2018
43
April, 2018
42
February, 2021
34
October, 2019
22
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
433
bigWig
429
bam
402
fastq
211
bed narrowPeak
168
tsv
112
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
16
tagAlign
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
826
Homo sapiens
Biosample type
2668
tissue
826
primary cell
652
cell line
394
in vitro differentiated cells
10
stem cell
Organ
353
epithelium
299
pancreas
37
connective tissue
36
vasculature
33
kidney
31
blood vessel
22
vein
20
brain
13
liver
13
musculature of body
12
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
548
AMP
277
HPAP
T1D
1
ITG
Genome assembly (visualization)
438
hg19
356
GRCh38
Lab
513
AMP-T2D consortium
277
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
T1D
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
826 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
35
13
12
52
1
pancreatic beta cell
23
13
12
21
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
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