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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
ChIP-seq
2
ATAC-seq
Assay category
206
DNA accessibility
Date released
187
June, 2019
9
November, 2018
5
October, 2019
2
August, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
1713
bam
1678
bigWig
1502
tsv
501
fastq
489
bed narrowPeak
238
bigBed narrowPeak
218
bed bed3+
206
bed broadPeak
204
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
22
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
vcf
Organism
206
Homo sapiens
Biosample type
178
tissue
26
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
ureter
16
epithelium
11
vasculature
9
blood vessel
9
connective tissue
9
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
vein
1
spleen
Project
206
AMP
Genome assembly (visualization)
204
GRCh38
182
hg19
Lab
204
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
award.project!
T1D
assay_title!
ChIP-seq
organ_slims!
vein
BIOSAMPLE
ASSAY
206 results
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Clear Filters
DNase-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 17 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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