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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
865
ChIP-seq
249
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
865
DNA binding
Target of assay
591
histone modification
590
histone
307
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
Available data
720
bam
573
bigWig
553
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
858
Homo sapiens
Biosample type
865
tissue
482
cell line
198
in vitro differentiated cells
195
primary cell
3
stem cell
Organ
209
brain
155
liver
115
pancreas
83
heart
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
865
AMP
T1D
Genome assembly (visualization)
548
GRCh38
527
hg19
Lab
865
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
T1D
BIOSAMPLE
ASSAY
865 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
69
subcutaneous abdominal adipose tissue
36
body of pancreas
35
heart left ventricle
35
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