Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1783
ChIP-seq
total RNA-seq
520
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
75
WGBS
66
snATAC-seq
40
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
71
DNA accessibility
Date released
27
February, 2021
22
May, 2022
10
April, 2020
6
August, 2021
2
July, 2019
1
August, 2017
1
August, 2022
1
November, 2018
1
October, 2019
Available data
29
fastq
21
zippedFastqFolder
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
1
bed bed3+
1
tar
1
txt
Organism
70
Homo sapiens
Biosample type
49
primary cell
22
tissue
Organ
10
lung
7
kidney
3
pancreas
1
blood vessel
1
brain
1
epithelium
1
musculature of body
1
vasculature
1
vein
Project
48
HPAP
T1D
13
AMP
10
LungMap
Genome assembly (visualization)
6
hg19
Lab
48
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
7
AMP-T2D consortium
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
award.project!
T1D
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
71 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
48
endothelial cell of umbilical vein
1
tissue
lung
10
kidney
6
1
islet of Langerhans
1
1
frontal cortex
1
pancreas
1
+ See 1 more…
See all biosamples
Download