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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
905
ChIP-seq
249
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
196
DNA accessibility
Date released
163
June, 2019
10
April, 2020
9
November, 2018
6
August, 2021
4
October, 2019
2
August, 2017
1
August, 2022
1
May, 2022
Available data
177
bam
177
bed bed3+
177
bed narrowPeak
177
bigBed narrowPeak
177
bigWig
176
bed broadPeak
176
bigBed broadPeak
10
fastq
1
txt
Organism
195
Homo sapiens
Biosample type
196
tissue
79
primary cell
2
cell line
1
in vitro differentiated cells
Organ
74
kidney
36
limb
33
musculature of body
27
brain
27
heart
18
ureter
10
lung
8
pancreas
5
blood vessel
5
vasculature
4
artery
4
liver
3
eye
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
186
AMP
10
LungMap
T1D
Genome assembly (visualization)
177
GRCh38
162
hg19
Lab
180
AMP-T2D consortium
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
2
audit script error
1
inconsistent ontology term
award.project!
T1D
BIOSAMPLE
ASSAY
196 results
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DNase-seq
snATAC-seq
tissue
kidney
13
6
heart
18
muscle of arm
17
brain
14
muscle of leg
13
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