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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
28
DNA binding
2
DNA accessibility
Target of assay
25
histone
25
histone modification
15
broad histone mark
13
transcription factor
narrow histone mark
2
RNA binding protein
Date released
14
August, 2017
13
November, 2017
2
October, 2019
1
March, 2019
Available data
421
bam
405
fastq
207
bigWig
200
tsv
161
txt
154
bed narrowPeak
153
zippedFastqFolder
113
tagAlign
43
bigBed narrowPeak
30
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
17
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
30
Homo sapiens
Biosample type
13
cell line
13
tissue
4
primary cell
Organ
13
liver
8
musculature of body
5
pancreas
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
30
AMP
Genome assembly (visualization)
269
hg19
GRCh38
Lab
29
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent control read length
award.project!
T1D
assembly!
GRCh38
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
13
tissue
skeletal muscle tissue
8
islet of Langerhans
4
1
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
1
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