Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
892
total RNA-seq
531
ChIP-seq
172
DNase-seq
120
ATAC-seq
16
small RNA-seq
15
WGBS
6
single cell RNA-seq
Assay category
914
Transcription
531
DNA binding
292
DNA accessibility
15
DNA methylation
Target of assay
438
histone modification
437
histone
231
narrow histone mark
206
broad histone mark
90
transcription factor
24
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
162
May, 2020
160
June, 2019
158
August, 2017
140
October, 2019
116
July, 2018
64
April, 2019
64
August, 2021
57
November, 2017
55
July, 2019
53
May, 2019
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
36
December, 2017
22
November, 2018
14
October, 2017
12
May, 2023
6
April, 2018
6
January, 2019
6
March, 2020
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1640
bigWig
1631
bam
913
tsv
781
bed narrowPeak
493
bigBed narrowPeak
280
fastq
199
bed bed3+
186
bed broadPeak
171
bigBed broadPeak
116
tagAlign
64
xls
15
bed bedMethyl
15
bigBed bedMethyl
1
tagAlign bed3+
Organism
1746
Homo sapiens
Biosample type
1752
tissue
396
cell line
334
primary cell
265
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
384
pancreas
238
liver
203
brain
191
heart
165
kidney
105
blood vessel
vasculature
96
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1752
AMP
T1D
Genome assembly (visualization)
1752
GRCh38
1683
hg19
Lab
1634
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
T1D
organ_slims!
vasculature
BIOSAMPLE
ASSAY
1752 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
23
1
22
6
liver
147
75
2
1
kidney
20
13
75
bone tissue
58
+ See 137 more…
See all biosamples
Download