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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
198
ChIP-seq
187
single cell RNA-seq
151
total RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
5
pCHi-C
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
Assay category
342
Transcription
280
DNA accessibility
198
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
155
histone
155
histone modification
79
broad histone mark
76
narrow histone mark
36
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
55
May, 2021
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
March, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
December, 2017
3
June, 2018
3
March, 2023
3
October, 2022
2
October, 2018
1
January, 2018
1
November, 2018
Available data
436
bigWig
432
bam
413
fastq
213
bed narrowPeak
178
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
40
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
892
Homo sapiens
Biosample type
2746
tissue
884
primary cell
652
cell line
394
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
567
AMP
324
HPAP
T1D
2
community
1
ITG
Genome assembly (visualization)
451
hg19
359
GRCh38
1
hg18
Lab
532
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
50
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
T1D
audit.ERROR.category!
inconsistent replicate
BIOSAMPLE
ASSAY
894 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
primary cell
pancreatic alpha cell
35
13
12
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
13
12
21
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
+ See 86 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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