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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
115
ChIP-seq
4
GRO-seq
Assay category
127
Transcription
115
DNA binding
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
37
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
84
May, 2021
47
August, 2017
34
December, 2017
31
February, 2018
22
February, 2021
20
August, 2021
4
January, 2018
2
March, 2020
2
October, 2019
Available data
273
bam
246
bigWig
140
fastq
131
tsv
110
bed narrowPeak
40
tagAlign
21
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
246
Homo sapiens
Biosample type
1546
tissue
513
cell line
325
primary cell
246
in vitro differentiated cells
3
stem cell
Organ
52
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
246
AMP
Genome assembly (visualization)
242
GRCh38
241
hg19
4
hg18
Lab
246
AMP-T2D consortium
Audit category:
92
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
award.project!
T1D
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
246 results
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total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
47
neural progenitor cell
7
13
cardiac precursors (cardiac muscle cell)
19
pancreatic endoderm
4
12
1
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