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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
109
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
Assay category
132
Transcription
109
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
63
histone
63
histone modification
32
broad histone mark
31
narrow histone mark
24
transcription factor
22
control
7
RNA binding protein
1
chromatin remodeller
Date released
130
May, 2021
August, 2017
42
August, 2021
30
December, 2017
26
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
209
bam
190
bigWig
125
tsv
75
bed narrowPeak
60
fastq
26
tagAlign
16
bigBed narrowPeak
15
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
297
Homo sapiens
Biosample type
2462
tissue
825
primary cell
645
cell line
297
in vitro differentiated cells
10
stem cell
Organ
29
connective tissue
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
297
AMP
Genome assembly (visualization)
227
hg19
195
GRCh38
3
hg18
Lab
243
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
8
inconsistent control read length
award.project!
T1D
organ_slims!
embryo
month_released!
August, 2017
BIOSAMPLE
ASSAY
297 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
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