Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
130
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
173
DNA binding
132
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
99
histone
99
histone modification
52
broad histone mark
46
narrow histone mark
45
transcription factor
29
control
11
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
42
August, 2021
30
December, 2017
26
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
260
bam
236
bigWig
125
tsv
116
bed narrowPeak
114
fastq
37
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
362
Homo sapiens
Biosample type
2271
tissue
557
cell line
538
primary cell
362
in vitro differentiated cells
10
stem cell
Organ
97
connective tissue
embryo
24
epithelium
15
liver
pancreas
1
adipose tissue
1
heart
Project
362
AMP
Genome assembly (visualization)
274
hg19
242
GRCh38
3
hg18
Lab
308
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
award.project!
T1D
organ_slims!
embryo
pancreas
BIOSAMPLE
ASSAY
362 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 26 more…
See all biosamples
Download